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Restoring files in JetBackup 5 works a bit differently than in older JetBackup releases.

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Restore primary domain files

For the primary domain, select the public_html directory when you restore.

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Restore subdomain or addon domain files

For subdomains or addon domains, a known JetBackup issue can leave folder permissions wrong after a restore (a fix is planned). After restoring, set the domain’s document root directory to 755.